When you import a bones in an existing skeleton, the skinned bones origin are set to 0,0.
I'll provide picture, I hope they will help you understand better the problem.
I didn't get any error so I can't give a spine.log...
I can shared the exported JSON though, even if I don't think it will help you that much :
 
{
"skeleton": {
	"hash": "lC9AKtYPrrk",
	"spine": "4.2.09-beta",
	"x": 379.12,
	"y": -819.96,
	"width": 916.86,
	"height": 468.29,
	"images": "",
	"audio": ""
},
"bones": [
	{ "name": "root" },
	{ "name": "bone", "parent": "root", "length": 248.36, "x": 500.74, "y": -449.08 },
	{ "name": "bone2", "parent": "bone", "length": 196.74, "rotation": -0.72, "x": 248.36 },
	{ "name": "bone3", "parent": "bone2", "length": 157.38, "rotation": 0.72, "x": 196.74 },
	{
		"name": "bone4",
		"parent": "root",
		"length": 248.36,
		"x": 500.74,
		"y": -753.99,
		"skin": true,
		"color": "ff0000ff"
	},
	{
		"name": "bone5",
		"parent": "bone4",
		"length": 196.74,
		"rotation": -0.72,
		"x": 248.36,
		"skin": true,
		"color": "ff0000ff"
	},
	{
		"name": "bone6",
		"parent": "bone5",
		"length": 157.38,
		"rotation": 0.72,
		"x": 196.74,
		"skin": true,
		"color": "ff0000ff"
	},
	{ "name": "bone7", "parent": "root", "length": 248.36, "x": 500.74, "y": -1105.63, "color": "06ff00ff" },
	{
		"name": "bone8",
		"parent": "bone7",
		"length": 196.74,
		"rotation": -0.72,
		"x": 248.36,
		"skin": true,
		"color": "06ff00ff"
	},
	{
		"name": "bone9",
		"parent": "bone8",
		"length": 157.38,
		"rotation": 0.72,
		"x": 196.74,
		"skin": true,
		"color": "06ff00ff"
	},
	{ "name": "bone10", "parent": "root", "length": 248.36, "x": 500.74, "y": -1422.84, "color": "009fffff" },
	{ "name": "bone11", "parent": "bone10", "length": 196.74, "rotation": -0.72, "x": 248.36, "color": "009fffff" },
	{
		"name": "bone12",
		"parent": "bone11",
		"length": 157.38,
		"rotation": 0.72,
		"x": 196.74,
		"skin": true,
		"color": "009fffff"
	}
],
"slots": [
	{ "name": "bone", "bone": "bone" },
	{ "name": "bone2", "bone": "bone4", "color": "ff0000ff", "attachment": "bone" },
	{ "name": "bone3", "bone": "bone7", "color": "1aff00ff", "attachment": "bone" },
	{ "name": "bone4", "bone": "bone10", "color": "00a6ffff", "attachment": "bone" }
],
"skins": [
	{
		"name": "Skin 1",
		"color": "ff0000ff",
		"bones": [ "bone4", "bone5", "bone6" ]
	},
	{
		"name": "Skin 2",
		"color": "17ff00ff",
		"bones": [ "bone8", "bone9" ]
	},
	{
		"name": "Skin 3",
		"color": "00b0ffff",
		"bones": [ "bone12" ]
	}
],
"animations": {
	"First": {
		"bones": {
			"bone": {
				"rotate": [
					{},
					{ "time": 0.6667, "value": -15.98 },
					{ "time": 2, "value": 17.68 },
					{ "time": 2.6667 }
				]
			},
			"bone2": {
				"rotate": [
					{},
					{ "time": 0.6667, "value": -15.98 },
					{ "time": 2, "value": 17.68 },
					{ "time": 2.6667 }
				]
			},
			"bone3": {
				"rotate": [
					{},
					{ "time": 0.6667, "value": -15.98 },
					{ "time": 2, "value": 17.68 },
					{ "time": 2.6667 }
				]
			},
			"bone4": {
				"rotate": [
					{},
					{ "time": 0.6667, "value": -15.98 },
					{ "time": 2, "value": 17.68 },
					{ "time": 2.6667 }
				]
			},
			"bone5": {
				"rotate": [
					{},
					{ "time": 0.6667, "value": -15.98 },
					{ "time": 2, "value": 17.68 },
					{ "time": 2.6667 }
				]
			},
			"bone6": {
				"rotate": [
					{},
					{ "time": 0.6667, "value": -15.98 },
					{ "time": 2, "value": 17.68 },
					{ "time": 2.6667 }
				]
			},
			"bone7": {
				"rotate": [
					{},
					{ "time": 0.6667, "value": -15.98 },
					{ "time": 2, "value": 17.68 },
					{ "time": 2.6667 }
				]
			},
			"bone8": {
				"rotate": [
					{},
					{ "time": 0.6667, "value": -15.98 },
					{ "time": 2, "value": 17.68 },
					{ "time": 2.6667 }
				]
			},
			"bone9": {
				"rotate": [
					{},
					{ "time": 0.6667, "value": -15.98 },
					{ "time": 2, "value": 17.68 },
					{ "time": 2.6667 }
				]
			},
			"bone10": {
				"rotate": [
					{},
					{ "time": 0.6667, "value": -15.98 },
					{ "time": 2, "value": 17.68 },
					{ "time": 2.6667 }
				]
			},
			"bone11": {
				"rotate": [
					{},
					{ "time": 0.6667, "value": -15.98 },
					{ "time": 2, "value": 17.68 },
					{ "time": 2.6667 }
				]
			},
			"bone12": {
				"rotate": [
					{},
					{ "time": 0.6667, "value": -15.98 },
					{ "time": 2, "value": 17.68 },
					{ "time": 2.6667 }
				]
			}
		}
	}
}
}